- The study of network medicine on heroin use disorder (MOST 111-2635-E-001)
- The relationship between psychiatric drugs and disease development pathways (MOST 106-2221-E-320-003)
- Integration of systems-level molecular data and population-based data for elucidating disease-disease associations in thyroid disease(MOST 104-2221-E-320-004)
- The study of pathway and translational medicine in disease network (MOST 103-2221-E-320 -007)
- The study of human interactome and disease pathway (NSC 102-2221-E-320 -008)
- The study of human diseasome maps in Taiwan (NSC 101-2221-E-320-009)
- The study of dynamics and pathways in human disease networks (NSC 100-2221-E-320-006)
- The use of clustering models and generalized multifactor dimensionality reduction to identify gene-gene interaction in cancer researches (NSC 99-2221-E-320-006)
- Identification of copy numbers alterations using stochastic differentiation equation model with regression for camcer stidoes (NSC 98-2221-E-320-007)
- A stochastic differentiation equation model with S-system to dynamic simulating biochemical networks (NSC 97-2218-E-320-001)